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Dr. Van Belle Werner

Birthday/place 21. Juni 1975; Anderlecht; Belgien
Living Kronacherstrasse 4b, 796349 Grenzach-Wyhlen; Deutschland
Internet werner@yellowcouch.org; http://werner.yellowcouch.org/
Phone (+49) 76 249 84 72 94
Languages Flemish, English, German
   
Programming languages C, C++, C#, PHP, Java, Prolog, Pascal, Python, Scheme
Tools & Libraries Linux, MySql, Qt, Apache2
   

Education

Previous Employment

Sep. 09$\rightarrow$ Apr. 10
Dozent Duale Hochschule Baden-Württemberg

- 32 teaching hours Bioinformatics
- 20 teaching hours Informatik-II
- 18 teaching hours Mathematische Anwendungen
- 32 teaching hours Databases
Mär. 08$\rightarrow$ Feb. 09
Senior research assistent ETH Zürich

- Analysis of siRNA Screens
- Analysis of data generated through sequencing by synthesis (Illumina)
- Setting up a data analysis pipeline for the deep sequencing platform
- Data mining epigenetic datasets
- Tool development for analysis of deep sequencing data
- Project guidance for a computer science course
Mär 07 $\rightarrow$ Dez. 07
Data analysis Quality Control
University Hospital of Nortern Norway

- Statistical Analysis of Realtime/Quantitative PCR experiments
- Image & Statistical analysis of filmed transgenic mice
- Prediction of relevant genes/proteins through analysis of protein intereaction maps
Apr. 04 $\rightarrow$ Mär 07
Researcher NORUT IT

- Project acquisition
- Image & Statistical Analysis of 2D Electrophoretic Gel images
- Denoising of Mass Spectrometric Data (MALDI-TOF & TOF/TOF)
- Investigating ship-to-shore protocols

- Jurymember 'Open Source Awards' CETRIL 2006
Jan. 06 $\rightarrow$ Dez. 06

Mär 04 $\rightarrow$ Apr. 04
Postdoctoral Researcher
University of Tromsø, Computer Science & Virology Department

- paper writing
- website generation
- analysis of microarrays
Feb. 99 $\rightarrow$ Sep. 03

Mär 98 $\rightarrow$ Dez. 98

Okt. 97 $\rightarrow$ Dez. 97
Researcher, Teaching Assistant
University Brussels, Computer Science Department

- cooperation with with Rijks Universiteit Gent, Katholieke Universiteit Leuven, Limburgs Universitair Centrum, Siemens, Barco-Graphics, Agfa Gevaert, Imec, Philips and Alcatel

- development of distributed programming languages
- project acquisition
- Exercises Distributed Systems, Concurrent Systems, Theory of database systems, Graphics and Algorithms and Data Structures
- Advisor for for 16 Masterstudents, co-advisor for 2 PhD Students
Jan 98 $\rightarrow$ Feb. 98
Software engineer MediaGeniX

- Investigating Long Running Transactions & Java Based Printing
   

Dissemination

* is the corresponding author. $\dag $ are equal contributors. For a full list of publications, presentations, deliverables etc, please visit http://werner.yellowcouch.org/Papers/

Publications

1. Abil Saj, Zeynep Arziman${}^\dag $, Denise Stempfle${}^\dag $, Werner Van Belle, Ursula Sauder, Thomas Horn, Markus Dürrenberger, Renato Paro, Michael Boutros, Gunter Merde${}^\star$; A Combined Ex Vivo and In Vivo RNAi Screen for Notch Regulators in Drosophila Reveals an Extensive Notch Interaction Network; Developmental Cell; Elsevier; volume 18; pages 862-876; May 2010

2. Line Sæther${}^\star$, Werner Van Belle, Bruno Laeng, Tim Brennen, Øvervoll Morten; Anchoring gaze when categorizing faces sex: Evidence from eye-tracking data; Vision Research; Elsevier; Editor(s) Cristopher W. Tyler; volume 49; nr 23; pages 2870-2880; August 2009

3. Piotr J. Balwierz, Piero Carninci, Carsten Daub, Jun Kawai, Werner Van Belle, Christian Beisel, Erik Van Nimwegen${}^\star$; Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.; Genome Biology; Biomed Central; volume 10; nr 7; pages R79; July 2009

4. Nancy Gerits${}^\star$, Werner Van Belle, Ugo Moens; Transgenic mice expressing constitutive active MAPKAPK5 display gender-dependent differences in exploration and activity; Behavioral and Brain Functions; Biomed Central; Editor(s) Terje Sagvolden; volume 3; nr 58; November 2007

5. Werner Van Belle${}^\star$, Nancy Gerits, Kirsti Jakobsen, Vigdis Brox, Marijke Van Ghelue, Ugo Moens; Confidence Intervals on Microarray Measurement of Differentially Expressed Genes: A Case Study on the effects of MK5, TAF4 and FKRP on the transcriptome; Gene Regulation and Systems Biology; Libertas Academus Press; nr 1; pages 57-72; May 2007

6. Werner Van Belle${}^\star$${}^\dag $, Jessie Dedecker${}^\dag $; Ambient Actors as a Formalism for Ubiquitous and Mobile Computing; Handbook for Ubiquitous and Mobile Computing; American Scientific Publishers; October 2006

7. Werner Van Belle${}^\star$; Dj-ing under Linux with Bpmdj; Linux+ Magazine; nr 25; October 2006

8. Werner Van Belle${}^\star$, Gry Sjøholt, Nina Ånensen, Kjell-Arild Høgda, Bjørn Tore Gjertsen; Adaptive contrast enhancement of two-dimensional electrophoretic protein gel images facilitates visualization, orientation and alignment; Electrophoresis; Wiley Interscience Vch; volume 27; nr 20; pages 4086-4095; October 2006

9. Nina Ånensen, Ingvild Haaland, Clive D'Santos, Werner Van Belle, Bjørn Tore Gjertsen${}^\star$; Proteomics of p53 in Diagnostics and Therapy of Acute Myeloid Leukemia; Current Pharmaceutical Biotechnology; Bentham Science Publishers Ltd.; volume 7; nr 3; July 2006

10. Werner Van Belle${}^\star$, Nina Ånensen, Ingvild Haaland, Oystein Bruserud, Kjell-Arild Høgda, Bjørn Tore Gjertsen; Correlation analysis of two-dimensional gel electrophoretic protein patterns and biological variables; BMC Bioinformatics; volume 7; nr 198; April 2006

11. Werner Van Belle${}^\star$, Bjørn Tore Gjertsen, Rebecca Katherine; Method and Apparatus for Correlation Analysis of Electrophoretic Protein Patterns; Submitted as a patent application; Editor(s) Frank B. Dehn; April 2006

12. Werner Van Belle${}^\star$, Olav Mjaavatten; Artefacts in the Mass Spectra Output from MALDI-TOF and MALDI-TOF/TOF Machines; Proceeding of the VIIth International Symposium of the Protein Society section proteomics, interactomics and protein networks; April 2005

13. Jessie Dedecker${}^\dag $, Werner Van Belle${}^\star$${}^\dag $; Actors for Mobile Ad-Hoc Networks (The Ambient Actor Model); Proceedings of Embedded and Ubiquitous Computing (EUC2004); Springer Verlag; Lecture Notes in Computer Science (LNCS 3207); Editor(s) Aizu-Wakamatsu; pages 482-494; August 2004

14. Jessie Dedecker${}^\star$, Werner Van Belle, Wolfgang De Meuter; Actors for Pervasive Computing; Proceeding of the workshop on reference architectures and patterns for pervasive computing (OOPSLA2003); June 2003

15. Werner Van Belle${}^\star$, Tom Mens, Theo D'Hondt; Using Genetic Programming to Generate Protocol Adaptors for Interprocess Communication; Evolvable Systems: From Biology to Hardware, Proceedings of the 5th Intl. Conference on Evolvable Systems (ICES2003); Springer Verlag: Lecture Notes in Computer Science (LNCS 2606); Editor(s) Andy M. Tyrrel and Pauline C. Haddow and Jim Torresen; pages 422-433; March 2003

16. Werner Van Belle${}^\star$, Karsten Verelst, Kristof Van Buggenhout, Theo D'Hondt; Is Message Sending Good enough for Distributed Systems ? Communication and synchronisation revisited; Accepted for publication in the proceedings of the Distributed Object Workshop at the European Conference on Object Oriented Programming 2001 (ECOOP 2001); June 2001

17. Werner Van Belle${}^\star$, Johan Fabry, Karsten Verelst, Theo D'Hondt; Experiences in Mobile Computing: The CBorg Mobile Multi-Agent System; Technology of Object-Oriented Languages and Systems (TOOLS 38): Components for Mobile Computing; IEEE Computer Society Press; Los Alamitos, California; Editor(s) Wolfgang Pree; pages 7-18; March 2001

18. Werner Van Belle${}^\star$, Karsten Verelst, Theo D'Hondt; The CBorg Mobile Multi-Agent System; Edited Volume on Infrastructures for Large-Scale Multi-Agent Systems; ACM; October 2000

19. Stefan Van Baelen${}^\star$, David Urting, Werner Van Belle, Viviane Jonckers, Tom Holvoet, Yolande Berbers, Karel De Vlaminck; Towards a unified terminology for component-based development; Submitted to ECOOP 2000; June 2000

20. Werner Van Belle${}^\star$, Theo D'Hondt; Agent mobility and Reification of Computational State; International Proceedings of Infrastructures for Agents, Multi-Agent Systems and Scalable Multi-Agent Systems; Springer Verlag; Lecture Notes in Artifical Intelligence (LNAI 1887); Editor(s) Tom Wagner and Omer Rana; pages 166-173; June 2000

21. Werner Van Belle${}^\star$, Karsten Verelst, Theo D'Hondt; Location Transparent Routing in Mobile Agent Systems - Merging Name Lookups with Routing; 7th IEEE Workshop on Future Trends of Distributed Computing Systems; IEEE Computer Society Press; Los Alamitos, California; Editor(s) A. Denise Williams; pages 207-212; December 1999

22. Wolfgang De Meuter${}^\star$, Kris De Volder, Werner Van Belle, Tom Tourwe, Theo D'Hondt; Prototype Based agents for the Web; Proceedings of the European Conference on Object Oriented Programming 1997 (ECOOP 1997), workshop on Prototype-Based Object-Oriented Programming; September 1997

Other Articles

1. Werner Van Belle; Classification of Rhythmical Patterns; Signal Processing; YellowCouch; September 2010

2. Werner Van Belle; Rhythm Pattern Extraction; Signal Processing; YellowCouch; August 2010

3. Werner Van Belle; Biasremoval from BPM Counters and an argument for the use of Measures per Minute instead of Beats per Minute; Signal Processing; YellowCouch; July 2010

4. Werner Van Belle; Active Objects: an Efficient Space/Time Separation of Concurrent Tasks through Active Message Queues; Computer Science; YellowCouch; February 2010

5. Werner Van Belle; FlowPipes: Isolating and Rejoining Data Tokens in the context of Data Analysis Pipelines; Bioinformatics; YellowCouch; December 2009

6. Werner Van Belle${}^\star$; Pattern Analysis of Human Histone Methylations and Acetylations through Cross Correlation Maps; Bioinformatics; YellowCouch; February 2009

7. Werner Van Belle${}^\star$, Nancy Gerits, Ugo Moens; Propagating Differential Gene Expression in Protein Interaction Networks; Bioinformatics; YellowCouch; February 2008

8. Werner Van Belle${}^\star$; An Adaptive Filter for the Correct Localization of Subimages: FFT based Subimage Localization Requires Image Normalization to work properly; Signal Processing; Yellowcouch; 11 pages; October 2007

9. Werner Van Belle${}^\star$; Correlation between the inproduct and the sum of absolute differences is -0.8485 for uniform sampled signals on [-1:1]; Signal Processing; YellowCouch Scientific; November 2006

10. Werner Van Belle${}^\star$; Antenna Finding and Interpolation/Extrapolation of Signal Strength; November 2006

11. Werner Van Belle${}^\star$; Observations on spectrum and spectrum histograms in BpmDj; September 2005

12. Werner Van Belle${}^\star$; The Failure of the Connectionless Model and the Vice Software Model; February 2004

13. Karsten Verelst${}^\star$, Werner Van Belle, Theo D'Hondt; The Reflective Virtual Machine; June 2001

14. Werner Van Belle${}^\star$; BPM Measurement of Digital Audio by Means of Beat Graphs & Ray Shooting; December 2000

15. Karsten Verelst${}^\star$, Werner Van Belle, Theo D'Hondt; Communication & Synchronization in Mobile Multi-Agent Systems, CSP Revisited; Submitted to workshop 23 at ECOOP 2000; March 2000

16. Werner Van Belle${}^\star$; Reinforcement Learning as a Routing Technique for Mobile Multi Agent Systems; January 1998

Werner 2011-01-21