Home Papers Reports Projects Code Fragments Dissertations Presentations Posters Proposals Lectures given Course notes

The Illumina GA II Sequencing System

Werner Van Belle1* - werner@yellowcouch.org, werner.van.belle@gmail.com

1- Deep Sequencing Unit Department of Biosystems Science and Engineering ETH Zurich; Mattenstrasse 24, Building 1058, Basel; Switzerland

Abstract :  In this talk I present the Illumina software pipeline 1.0. This pipeline analyzes output from the GA2 sequencing by synthesis analysis system and produces 4 major outputs: intensity files, sequences, alignments and various error reports. Next to the overall pipeline layout I present a number of usage scenarios and document how they are realized within the pipeline.

Keywords:  deep sequencing illumina software engineering
Reference:  Werner Van Belle; The Illumina GA II Sequencing System; Presented at Department of Computer Science; ETH Zurich; Zurich; Switzerland; October 2008