| Online Publication | Bioinformatics | Presentation | http://werner.yellowcouch.org/Papers/pippres0802 |
The Illumina GA II Sequencing System
Werner Van Belle1* - werner@yellowcouch.org, werner.van.belle@gmail.com
1- Deep Sequencing Unit
Department of Biosystems Science and Engineering
ETH Zurich; Mattenstrasse 24, Building 1058, Basel; Switzerland
Abstract : In this talk I present the Illumina software pipeline 1.0. This pipeline analyzes output from the GA2 sequencing by synthesis analysis system and produces 4 major outputs: intensity files, sequences, alignments and various error reports. Next to the overall pipeline layout I present a number of usage scenarios and document how they are realized within the pipeline.
Keywords:
deep sequencing illumina software engineering
Reference:
Werner Van Belle; The Illumina GA II Sequencing System; Presented at Department of Computer Science; ETH Zurich; Zurich; Switzerland; October 2008
| I'm currently looking for interesting work in the Basel area. If you have a challenging task with regard to data analysis and/or bioinformatics, please drop me a line. Momentan suche ich Arbeit in der Basler Umgebung. Nehmen Sie bitte kontakt auf falls Sie ein interessantes Problem im zusammenhang mit Bioinformatik und/oder Datenanalyse haben. |  |